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GBOL TranscriptomeShotgunAssemblyEntry

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Introduction
Obtaining GBOL
Contributing to GBOL
Reader
API/Empusa
API/Empusa
- API Development
- API Usage and examples
Ontology classes
Ontology classes
- GeographicalCoordinate
- Expression
- QTLMap
- AntiCodon
- Taxon
- Qualifier
  Qualifier
  - XRef
    XRef
    
    TaxonomyRef
  - Note
  - Citation
- MaterialSource
- ReadInformation
  ReadInformation
- Sequence
  Sequence
  - Protein
  - NASequence
    NASequence
    
    CompleteNASequence
    CompleteNASequence
    
    MiscNA
    
    Plasmid
    
    Chromosome
    
    PCRPrimer
    
    Barcode
    
    Transcript
    Transcript
    
    MaturedRNA
    MaturedRNA
    
    tmRNA
    
    rRNA
    
    mRNA
    
    tRNA
    
    ncRNA
    
    PrecursorRNA
    
    MiscRna
    
    ASVSequence
    
    UncompleteNASequence
    UncompleteNASequence
    
    Contig
    
    Read
    
    Scaffold
- Experiment
- Feature
  Feature
  - GeneralFeature
  - ProteinFeature
    ProteinFeature
    
    ProteinHomology
    
    ProteinStructure
    
    BindingSite
    BindingSite
    
    MoietyBindingSite
    
    ProteinInteractionSite
    
    NABindingSite
    
    SignalPeptide
    
    ModifiedResidue
    
    CrossLink
    
    ImmunoglobulinFeature
    
    ProteinRepeat
    
    Chain
    
    ConservedRegion
    ConservedRegion
    
    ProteinDomain
    
    CatalyticDomain
    
    ProPeptide
    
    MaturePeptide
    
    IntraMembraneRegion
    
    TransMembraneRegion
  - QTL
  - NAFeature
    NAFeature
    
    TranscriptFeature
    TranscriptFeature
    
    PolyASite
    
    FivePrimeUTR
    
    ThreePrimeUTR
    
    CDS
    
    MiscFeature
    
    Source
    
    GenomicFeature
    GenomicFeature
    
    Homology
    
    TranscriptionElement
    TranscriptionElement
    
    IntegratedVirus
    
    Intron
    
    Gene
    
    Exon
    
    Operon
    
    StructureFeature
    StructureFeature
    
    MiscStructure
    
    StemLoop
    
    RepeatFeature
    RepeatFeature
    
    Centromere
    
    CRISPRCassette
    
    RepeatRegion
    
    Telomere
    
    MobileElement
    
    RecognizedRegion
    RecognizedRegion
    
    BiologicalRecognizedRegion
    BiologicalRecognizedRegion
    
    ProteinBinding
    
    MiscRecomb
    
    TransferOrigin
    
    ReplicationOrigin
    
    MiscBinding
    
    DLoop
    
    RegulationSite
    
    ArtificialRecognizedRegion
    ArtificialRecognizedRegion
    
    SequenceTaggedSite
    
    PrimerBinding
    
    SequenceAnnotation
    SequenceAnnotation
    
    AssemblyAnnotation
    AssemblyAnnotation
    
    AssemblyGap
    AssemblyGap
    
    KnownLengthAssemblyGap
    
    UnknownLengthAssemblyGap
    
    UnsureBases
    
    ModifiedBase
    
    VariationFeature
    VariationFeature
    
    Variation
    
    NaturalVariation
    
    MiscVariation
    
    UpdatedSequence
- Sample
- SequenceAssembly
- Library
- Position
  Position
  - FuzzyPosition
    FuzzyPosition
    
    InRangePosition
    
    AfterPosition
    
    OneOfPosition
    
    BeforePosition
  - ExactPosition
- SequencePart
  SequencePart
  - PartGap
    PartGap
    
    PartGapKnownLength
    
    PartGapUnknownLength
  - PartSequence
    PartSequence
    
    PartXRefSequence
    
    PartIncludedSequence
- void:Dataset
  void:Dataset
  - Database
  - GBOLDataSet
    GBOLDataSet
    
    PublishedGBOLDataSet
  - DataFile
    DataFile
    
    LocalDataFile
    LocalDataFile
    
    LocalSequenceFile
    
    RemoteDataFile
    RemoteDataFile
    
    RemoteSequenceFile
    
    PublicDataFile
- SequenceSet
  SequenceSet
  - BarcodeSet
  - ASVSet
    ASVSet
    
    RejectedASV
    
    RejectedAsChimera
  - PCRPrimerSet
- VariantGenotype
- Organism
- ExonList
- ProvenanceApplication
  ProvenanceApplication
  - ProvenanceClassification
    ProvenanceClassification
    
    ASVAssignment
    
    ssb:NGTax
  - ProvenanceMapping
    ProvenanceMapping
    
    TopHat
    
    Bowtie2
    
    Kallisto
    
    Star
    
    Cufflinks
  - ProvenanceAnnotation
    ProvenanceAnnotation
    
    sapp:Phobius
    
    sapp:Priam
    
    sapp:WoLFPSort
    
    sapp:HMM
    
    sapp:TMHMM
    
    sapp:Blast
    sapp:Blast
    
    sapp:Cog
    
    sapp:InterProScanModels
    
    sapp:ENZDP
    
    sapp:Aragorn
    
    sapp:SignalP
    
    sapp:RNAmmer
    
    sapp:InterProScan
    
    sapp:Prodigal
  - ProvenanceAssembly
    ProvenanceAssembly
    
    MegaHit
- Location
  Location
  - Base
  - Region
  - CollectionOfRegions
    CollectionOfRegions
    
    ListOfRegions
    
    BagOfRegions
  - InBetween
- Satellite
- Provenance
  Provenance
- provo:Activity
  provo:Activity
  - AnnotationActivity
    AnnotationActivity
    
    ManualAnnotationActivity
    
    AutomaticAnnotationActivity
- provo:Entity
  provo:Entity
  - Database
  - AnnotationResult
    AnnotationResult
    
    AnnotationLinkSet
  - TemporaryFile
  - GBOLDataSet
    GBOLDataSet
    
    PublishedGBOLDataSet
  - GBOLLinkSet
    GBOLLinkSet
    
    AnnotationLinkSet
  - DataFile
    DataFile
    
    LocalDataFile
    LocalDataFile
    
    LocalSequenceFile
    
    RemoteDataFile
    RemoteDataFile
    
    RemoteSequenceFile
    
    PublicDataFile
- dc:MediaTypeOrExtent
- bibo:Literature
  bibo:Literature
  - bibo:Collection
    bibo:Collection
    
    bibo:Website
    
    bibo:Periodical
    bibo:Periodical
    
    bibo:Magazine
    
    bibo:Code
    
    bibo:CourtReporter
    
    bibo:Newspaper
    
    bibo:Journal
    
    bibo:Series
    
    bibo:MultiVolumeBook
  - bibo:Document
    bibo:Document
    
    bibo:Image
    bibo:Image
    
    bibo:Map
    
    bibo:Report
    
    bibo:CollectedDocument
    bibo:CollectedDocument
    
    bibo:EditedBook
    
    bibo:Issue
    
    bibo:Thesis
    
    bibo:Standard
    
    bibo:PersonalCommunicationDocument
    bibo:PersonalCommunicationDocument
    
    bibo:Email
    
    bibo:Letter
    
    bibo:Note
    
    bibo:AudioDocument
    
    bibo:DocumentPart
    bibo:DocumentPart
    
    bibo:BookSection
    bibo:BookSection
    
    bibo:Chapter
    
    bibo:Slide
    
    bibo:Excerpt
    bibo:Excerpt
    
    bibo:Quote
    
    bibo:LegalDocument
    bibo:LegalDocument
    
    bibo:LegalCaseDocument
    bibo:LegalCaseDocument
    
    bibo:Brief
    
    bibo:LegalDecision
    
    bibo:Legislation
    bibo:Legislation
    
    bibo:Statute
    
    bibo:Bill
    
    bibo:Manual
    
    bibo:AudioVisualDocument
    bibo:AudioVisualDocument
    
    bibo:Film
    
    bibo:Article
    bibo:Article
    
    bibo:AcademicArticle
    
    bibo:Slideshow
    
    bibo:Manuscript
    
    bibo:Book
    bibo:Book
    
    bibo:Proceedings
    
    bibo:Webpage
    
    bibo:Patent
    
    bibo:ReferenceSource
- foaf:Agent
  foaf:Agent
  - foaf:Person
    foaf:Person
    
    provo:Person
    provo:Person
    
    Curator
  - foaf:Organization
    foaf:Organization
    
    provo:Organization
  - provo:Agent
    provo:Agent
    
    provo:Organization
    
    provo:SoftwareAgent
    provo:SoftwareAgent
    
    AnnotationSoftware
    
    provo:Person
    provo:Person
    
    Curator
- GeographicalLocation
  GeographicalLocation
- bibo:Event
  bibo:Event
- TranslExcept
EnumeratedValues
EnumeratedValues
- RecombinationType
  RecombinationType
- MapUnits
  MapUnits
  - bp
  - cM
- ReadOrientation
  ReadOrientation
  - RF
  - FF
  - RR
  - FR
- ProteinDomainType
  ProteinDomainType
- MobileElementType
  MobileElementType
  - InsertionSequence
  - Transposon
    Transposon
    
    Retrotransposon
    Retrotransposon
    
    NonLTRRetrotransposon
  - OtherMobileElementType
  - LINE
  - MITE
  - Integron
  - SINE
- AminoAcid
  AminoAcid
  - Asn
  - Hyl
  - Asp
  - Thr
  - AminoAcidOther
  - Pyl
  - Asx
  - Lys
  - Xle
  - Orn
  - Phe
  - Abu
  - Ile
  - bAla
  - Val
  - Leu
  - Ahe
  - Apm
  - MeGly
  - Ide
  - Gln
  - EtAsn
  - ThreeHyp
  - Des
  - His
  - Acp
  - Tyr
  - Xaa
  - Nva
  - Ala
  - TERM
  - MeIle
  - Cys
  - MeVal
  - Aad
  - Glu
  - Trp
  - EtGly
  - Pro
  - aHyl
  - Dbu
  - Aib
  - MeLys
  - Gly
  - Glx
  - Ser
  - Dpm
  - Met
  - Nle
  - Dpr
  - bAad
  - FourAbu
  - aIle
  - Sec
  - FourHyp
  - Arg
  - bAib
- bibo:ThesisDegree
  bibo:ThesisDegree
- Ocean
  Ocean
- ProteinStructureType
  ProteinStructureType
  - BetaStrand
  - AlphaHelix
  - CoiledCoil
  - Turn
- RegulatoryClass
  RegulatoryClass
- StrandType
  StrandType
  - SingleStrandedRNA
  - SingleStrandedDNA
  - DoubleStrandedDNA
    DoubleStrandedDNA
    
    ComplementaryDNA
  - DoubleStrandedRNA
- ImmunoglobulinRegionType
  ImmunoglobulinRegionType
- Country
  Country
  - Oman
  - Malaysia
  - Tunisia
  - Faroe_Islands
  - USA
  - Honduras
  - Singapore
  - Greece
  - Guyana
  - French_Southern_and_Antarctic_Lands
  - Latvia
  - Indonesia
  - Sint_Maarten
  - Korea
  - Former_Yugoslav_Republic_of_Macedonia
  - Micronesia
  - United_Kingdom
  - Moldova
  - Philippines
  - Sierra_Leone
  - Switzerland
  - West_Bank
  - Egypt
  - Guatemala
  - Togo
  - Paracel_Islands
  - Reunion
  - Cameroon
  - Yemen
  - Cocos_Islands
  - Baker_Island
  - Cayman_Islands
  - Italy
  - Nauru
  - Palmyra_Atoll
  - Venezuela
  - Botswana
  - Dominica
  - Swaziland
  - Wallis_and_Futuna
  - North_Korea
  - South_Korea
  - Juan_de_Nova_Island
  - Bahamas
  - Gibraltar
  - Tromelin_Island
  - Kyrgyzstan
  - Libya
  - Solomon_Islands
  - Gambia
  - Barbados
  - Afghanistan
  - Ethiopia
  - Lebanon
  - Trinidad_and_Tobago
  - Gabon
  - Guinea
  - Wake_Island
  - Slovakia
  - Ashmore_and_Cartier_Islands
  - Angola
  - Kenya
  - Curacao
  - Syria
  - Andorra
  - Albania
  - GuineaBissau
  - Pakistan
  - Tokelau
  - Northern_Mariana_Islands
  - Mayotte
  - Somalia
  - Croatia
  - Zaire
  - Coral_Sea_Islands
  - Eritrea
  - Mongolia
  - Paraguay
  - Bahrain
  - Portugal
  - Bolivia
  - Turks_and_Caicos_Islands
  - Brazil
  - Liberia
  - Senegal
  - Peru
  - South_Africa
  - Kuwait
  - Siam
  - Liechtenstein
  - Cambodia
  - Jamaica
  - Netherlands_Antilles
  - Israel
  - Jersey
  - Puerto_Rico
  - Hungary
  - Cyprus
  - American_Samoa
  - South_Sudan
  - Democratic_Republic_of_the_Congo
  - Papua_New_Guinea
  - Aruba
  - Isle_of_Man
  - El_Salvador
  - Sao_Tome_and_Principe
  - Serbia_and_Montenegro
  - Iran
  - Saudi_Arabia
  - British_Guiana
  - Brunei
  - Iraq
  - State_of_Palestine
  - Nigeria
  - Ireland
  - Svalbard
  - China
  - Equatorial_Guinea
  - Anguilla
  - Comoros
  - Falkland_Islands
  - Marshall_Islands
  - Heard_Island_and_McDonald_Islands
  - French_Guiana
  - Bosnia_and_Herzegovina
  - Chad
  - Fiji
  - Howland_Island
  - Denmark
  - Djibouti
  - Haiti
  - Namibia
  - Czechoslovakia
  - Line_Islands
  - Lesotho
  - Turkey
  - Canada
  - United_Arab_Emirates
  - Ukraine
  - Austria
  - Norfolk_Island
  - Taiwan
  - Borneo
  - USSR
  - Central_African_Republic
  - Suriname
  - Czech_Republic
  - Niue
  - Western_Sahara
  - Estonia
  - Belize
  - Costa_Rica
  - Montserrat
  - Niger
  - Samoa
  - Ghana
  - Tajikistan
  - Saint_Helena
  - Sudan
  - Guadeloupe
  - Australia
  - Saint_Kitts_and_Nevis
  - Malawi
  - Kazakhstan
  - Benin
  - Chile
  - Macedonia
  - Johnston_Atoll
  - Republic_of_the_Congo
  - Russia
  - Zimbabwe
  - Slovenia
  - Colombia
  - Guernsey
  - Montenegro
  - Guam
  - Mauritania
  - Saint_Vincent_and_the_Grenadines
  - New_Caledonia
  - Bangladesh
  - UnknownCountry
  - Mexico
  - Bhutan
  - Kerguelen_Archipelago
  - Burkina_Faso
  - Belgian_Congo
  - Palau
  - Jordan
  - India
  - Grenada
  - Iceland
  - Spain
  - Sri_Lanka
  - Clipperton_Island
  - Bermuda
  - Germany
  - Midway_Islands
  - Poland
  - Sweden
  - Madagascar
  - Panama
  - Uzbekistan
  - Belarus
  - Virgin_Islands
  - San_Marino
  - Zambia
  - Seychelles
  - Morocco
  - Kingman_Reef
  - Cook_Islands
  - Lithuania
  - Jarvis_Island
  - Viet_Nam
  - Georgia
  - Luxembourg
  - Mali
  - Monaco
  - Spratly_Islands
  - Europa_Island
  - Yugoslavia
  - Cape_Verde
  - France
  - Serbia
  - South_Georgia_and_the_South_Sandwich_Islands
  - Greenland
  - Japan
  - Kosovo
  - Burundi
  - Nicaragua
  - Tanzania
  - Tonga
  - East_Timor
  - Pitcairn_Islands
  - Navassa_Island
  - Bouvet_Island
  - Mozambique
  - Cuba
  - New_Zealand
  - Romania
  - Argentina
  - Christmas_Island
  - Norway
  - Uganda
  - Azerbaijan
  - Laos
  - Uruguay
  - Algeria
  - Bassas_da_India
  - British_Virgin_Islands
  - Kiribati
  - Rwanda
  - Antarctica
  - French_Polynesia
  - Antigua_and_Barbuda
  - Myanmar
  - Thailand
  - Cote_d_Ivoire
  - Burma
  - Mauritius
  - Martinique
  - Tuvalu
  - Dominican_Republic
  - Vanuatu
  - Maldives
  - Qatar
  - Finland
  - Saint_Pierre_and_Miquelon
  - Belgium
  - Nepal
  - Glorioso_Islands
  - Netherlands
  - Hong_Kong
  - Gaza_Strip
  - Saint_Lucia
  - Malta
  - Turkmenistan
  - Armenia
  - Jan_Mayen
  - Macau
  - Ecuador
  - Bulgaria
- QTLTypes
  QTLTypes
- TaxonAssignmentType
  TaxonAssignmentType
- PseudoGeneType
  PseudoGeneType
- ExpressionType
  ExpressionType
  - Normalised
    Normalised
    
    FPKM
    
    RPKM
    
    TPM
  - Counts
    Counts
    
    EstimatedCounts
    
    ExpectedCounts
    
    RawCounts
- ncRNAType
  ncRNAType
  - antisenseRNA
  - miRNA
  - SRPRNA
  - scRNA
  - ncRNATypeOther
  - piRNA
  - snRNA
  - YRNA
  - ribozyme
  - snoRNA
  - guideRNA
  - rasiRNA
  - siRNA
  - lncRNA
  - vaultRNA
  - telomeraseRNA
  - autocatalyticallySplicedIntron
  - hammerheadRibozyme
  - RNasePRNA
  - RNaseMRPRNA
- SequencingPlatform
  SequencingPlatform
  - x454
  - SOLID
  - illumina
    illumina
    
    hiseq
    hiseq
    
    hiseq2000
    
    hiseq3000
    
    hiseq4000
    
    hiseqx
    hiseqx
    
    hiseqx_five
    
    hiseqx_ten
    
    miniseq
    
    miseq
    miseq
    
    miseqdx
    
    miseqfgx
    
    nextseq
    nextseq
    
    nextseq500
    
    nextseq550
    
    novaseq
    novaseq
    
    novaseq600
  - Nanopore
- CollectionSampleType
  CollectionSampleType
- RepeatType
  RepeatType
- LinkageEvidence
  LinkageEvidence
  - LinkageNA
  - AlignGenus
  - PCR
  - Map
  - AlignXGenus
  - Strobe
  - Unspecified
  - PairedEnds
  - WithinClone
  - AlignTranscript
  - CloneContig
- Topology
  Topology
- VariationTypes
  VariationTypes
  - SSR
  - RFLP
  - InDel
  - SNP
- bibo:DocumentStatus
  bibo:DocumentStatus
- BaseType
  BaseType
  - BaseM3c
  - BaseM7g
  - BaseMs2i6a
  - BaseMv
  - BaseMan_q
  - BaseX
  - BaseT
  - BaseDhu
  - BaseYw
  - BaseP
  - BaseUm
  - BaseQ
  - BaseM5c
  - BaseS4u
  - BaseMam5u
  - BaseGal_q
  - BaseI
  - BaseM4c
  - BaseT6a
  - BaseMcm5s2u
  - BaseM22g
  - BaseM5u
  - BaseO5u
  - BaseChm5u
  - BaseTm
  - BaseI6a
  - BaseCmnm5u
  - BaseM6a
  - BaseM1a
  - BaseOsyw
  - BaseM1g
  - BaseM1f
  - BaseMo5u
  - BaseCm
  - BaseM1i
  - BaseMs2t6a
  - BaseGm
  - BaseMt6a
  - BaseMam5s2u
  - BaseOther
  - BaseAc4c
  - BaseS2t
  - BaseS2u
  - BaseM2a
  - BaseM2g
  - BaseMcm5u
  - BaseS2c
  - BaseCmnm5s2u
  - BaseFm
- NomenclaturalType
  NomenclaturalType
  - Paralectotype
  - ReferenceStrain
  - Paratype
  - Syntype
  - Neotype
  - ExType
  - Isosyntype
  - Allotype
  - Lectotype
  - TypeStrain
  - Isotype
  - Hapanotype
  - Epitype
  - Holotype
  - TypeMaterial
  - NeotypeStrain
- StrandPosition
  StrandPosition
- SatelliteType
  SatelliteType
- ReasonArtificialLocation
  ReasonArtificialLocation
- FileType
  FileType
  - TXT
  - GenBank
  - Other
  - TSV
  - FASTA
  - FASTQ
  - EMBL
  - CSV
- Rank
  Rank
- EntryType
  EntryType
  - HighLevelAssemblyInformation
  - MassGenomeAnnotationEntry
  - GenomeSurveySequenceEntry
  - StandardEntry
  - SequenceTaggedSiteEntry
  - HighThoughputCDNASequencingEntry
  - WholeGenomeShotgunEntry
  - TranscriptomeShotgunAssemblyEntry TranscriptomeShotgunAssemblyEntry
    Table of contents
    
    Subclasses
    
    Annotations
  - EnvironmentalSamplingSequencesEntry
  - ExpressedSequenceTagEntry
  - HighThoughputGenomeSequencingEntry
  - PatentEntry
  - ThirdPArtySequenceDataRecord
- GapType
  GapType
  - HeterochromatinGap
  - WithinScaffoldGap
    WithinScaffoldGap
    
    RepeatWithinScaffoldGap
  - UnknownGap
  - RepeatBetweeenScaffoldsGap
  - BetweenScaffoldsGap
  - TelemereGap
  - CentromereGap
  - ShortArmGap
Properties
Properties
- comment
- foaf:name
- sequencer
- function
- sequences
- numberOfSplicesAnnotated_sjdb
- bibo:edition
- libraryNum
- alleleFreq
- codonStart
- percentageOfReadsMappedToMultipleLoci
- taxonRank
- plasmid
- provo:startedAtTime
- matrixType
- event:produced_in
  event:produced_in
  - bibo:presentedAt
- score
- subSpecies
- crossLinkTo
- taxon
- tagPeptide
- bibo:distributor
- project
- uniquelyMappedReadsPercentage
- mismatchDB
- forwardBarcode
- satellite
- unmodifiedState
- protein
- foaf:homepage
- uScore
- after
- strain
- region
- sMean
- macronuclear
- dc:abstract
- homologousTo
- entryType
- event:product
  event:product
  - bibo:presents
- rearranged
- queryStrand
- altitude
- phobiusType
- confidenceHigh
- includedXRefVersion
- bibo:recipient
- chromosome
- qtlMap
- rptUnitSeq
- sPos
- virusGenome
- relativeEnd
- dc:format
- variety
- haploQuality
- SQ
- reverseBarcode
- asvAssignment
- annotationResults
- bindingMoiety
- antiCodonSequence
- bibo:status
- readDepth
- releaseStatus
- quality
- strandType
- cTerminalMembrane
- heterozygousSamples
- lastPublishedDate
- estimatedLength
- experimentalEvidence
- immunoglobulinRegionType
- rptFamily
- firstPublic
- origin
- exceptRegion
- sourceReads
- plasmidName
- signatureDesc
- trait
- associatedFeature
- depthQuality
- xref
- linkageGroup
- collectionCode
- abstract
- totalReads
- text
- percentageOfReadsMappedToTooManyLoci
- expectedAlleleCounts
- replace
- wv:waiver
- label
- pReverseId
- mapQuality
- readLength
- pForwardRatio
- rReadLength
- strand
- dataSetVersion
- bibo:place
- includedXRefSequence
- foaf:mbox
- PG
- subStrain
- clone
- integratedRegion
- provo:endedAtTime
- identity97MismatchCount
- parameterString
- symbol
- reverseASV
- foaf:givenName
- confidenceLow
- numberOfSplicesGT_AG
- likelihood
- biomFile
- collectionSampleType
- localFilePath
- positiveHitProbability
- file
- dc:contributor
  dc:contributor
- recommendedName
- ttlFile
- integratedInto
- serotype
- geneSymbol
- accpetedSameBarcodeRatio
- key
- sample
- pattern
- generatedBy
- TDbias
- date
- keywords
- errorCorr
- dblinks
- accession
- provo:wasInformedBy
- mobileElementType
- dc:isPartOf
  dc:isPartOf
  - bibo:reproducedIn
- reads
- inputReads
- FSscore
- ribosomalSlippage
- alternativeNames
- foaf:title
- position
- labHost
- deletionAverageLength
- foaf:firstName
- locusTag
- cultivar
- numberOfSplicesTotal
- rov:legalName
- genotype
- void:uriSpace
- provenanceNote
- annotation
- asv
- commit
- includedSequence
- profileProportion
- allele
- members
- rScore
- varType
- phaseQuality
- bibo:shortDescription
- likelihoodscore
- environmentalSample
- fFile
- HMMlocation
- center
- derivedFrom
- ENVlocation
- bibo:degree
- size
- haplogroup
- format
- numberOfSplicesAT_AC
- insertionAverageLength
- modifiedState
- geneSymbolSynonym
- foaf:familyName
- classifyRatio
- isolationSource
- CIGAR
- fileType
- organism
- machine
- sha384
- sampleId
- foaf:logo
- sourceContigs
- void:uriRegexPattern
- bibo:owner
- retrievedFrom
- artificialLocation
- rptUnitRange
- taxonomyLineage
- phenotype
- secondarySignature
- accessedOn
- rFile
- forwardPrimer
- sMax
- proviral
- note
- dc:hasVersion
- ecotype
- numberOfSamples
- linkageEvidence
- dc:description
- void:uriLookupEndpoint
- numberOfReadsMappedToTooManyLoci
- profileRegioin
- numberHits
- fBarcodeLength
- void:dataDump
- dc:subject
- organelle
- replicationDirection
- oldLocusTag
- bibo:producer
- provo:actedOnBehalfOf
- beginPosition
- identity95MismatchCount
- provo:wasGeneratedBy
- satelliteName
- containedEntity
- organisms
- dc:publisher
  dc:publisher
  - bibo:issuer
- bibo:contributorList
  bibo:contributorList
- alleleCount
- fastQSet
- bitScore
- assignedTaxon
- ID
- id
- feature
- filter
- primerHitsAccepted
- wildtypeSamples
- refOrganism
- bibo:organizer
- maxbitscore
- reversePrimer
- finishedMappingOn
- dc:date
  dc:date
- latitude
- country
- formatURL
- remoteFileName
- popVariant
- percentageOfChimericReads
- provo:generated
- pVal
- HD
- mobileElementName
- value
- dc:license
- mismatches
- levelCount
- gaps
- identifiedBy
- includedRegion
- signalTarget
- deletionRatePerBase
- file2
- onProperty
- term
- longitude
- locality
- identity85MismatchCount
- PCRPrimers
- pseudogene
- geographicalLocation
- segment
- masterASVId
- subLocation
- homozygousSamples
- map
- bibo:suffixName
- sScore
- isolate
- referenceAllele
- percIdentity
- operon
- sequencingDepth
- firstPublicRelease
- length
- localFileName
- numberOfSplicesNonCanonical
- numberOfChimericReads
- haplotype
- numberOfReadsMappedToMultipleLoci
- taxonHitCount
- highlight
- md5
- bases
- modBase
- dc:relation
  dc:relation
- targetRegion
- identity90MismatchCount
- bibo:citedBy
- url
- eff_length
- nTerminalMembrane
- readCount
- experiment
- ALIlocation
- insertSize
- remoteFilePath
- dc:isVersionOf
  dc:isVersionOf
  - bibo:translationOf
- structureType
- evalue
- cPos
- aminoAcid
- bibo:numVolumes
- altOrganism
- altDepth
- wv:norms
- sequence
- maxClusteringMismatchCount
- TDscore
- averageMappedLength
- db
- product
- usedTaxonLevel
- email
- holddate
- bibo:hasPart
- taxonName
- dc:language
- CO
- referenceSequence
- insertionRatePerBase
- uniquelyMappedReadsNumber
- FSbias
- provo:used
- linkedDataBases
- dc:references
  dc:references
  - bibo:cites
- dc:title
- rdfs:label
- nomenclaturalType
- TDdomainsTotal
- gapLength
- mapAccession
- ratio
- proviralExtraction
- type
- percentageOfReadsUnmappedTooManyMismatches
- end
- TDievalue
- accuracy
- familyName
- sourceRegion
- rdf:value
- bibo:content
- compare
- signature
- conf
- bibo:numPages
- signal
- headerType
- minOTUSizeT
- tissueType
- phredProb
- pReverseRatio
- realGenotype
- profileId
- at
- ocean
- identLvl
- frequency
- collectedBy
- provo:wasDerivedFrom
- yPos
- fReadLength
- network
- provo:wasAttributedTo
- StrandOrientation
- d
- foaf:phone
- refdb
- percentageOfReadsUnmappedTooShort
- foundCatalyticPattern
- organismName
- endPosition
- rja
- alignLength
- scientificName
- barcodes
- void:sparqlEndpoint
- Type
- averageInputReadLength
- anticodon
- rdfs:comment
- sequencePart
- cellLine
- dc:dateSubmitted
- topology
- bibo:locator
  bibo:locator
- expression
- matrixElementType
- version
- alleleNumber
- forwardASV
- spacer
- numberOfInputReads
- fPrimerLength
- folder
- taxonomy
- mapName
- collectionDate
- shanon
- commonName
- assembly
- references
- validated
- homologousToDesc
- subClone
- satelliteType
- numberNotCalled
- gapType
- sex
- regulatoryClass
- proteinId
- commitId
- bitscore
- cellType
- percentageOfReadsUnmappedOther
- standardName
- taxonType
- recombinationType
- bibo:court
- exon
- membershipClass
- antiCodingRegion
- dMaxCut
- samples
- minPerT
- ancestralAllele
- intron
- rPrimerLength
- foaf:based_near
- target
- operonId
- exception
- host
- startedMappingOn
- lastPublishedRelease
- boundMoiety
- begin
- reference
- gcContent
- relativeStart
- domainType
- foaf:surName
- crossLinkType
- genotypeQuality
- refDepth
- logFile
- bibo:localityName
- provenance
- primerHitsAcceptedRatio
- phaseSet
- rBarcodeFile
- identity92MismatchCount
- dc:isReferencedBy
  dc:isReferencedBy
  - bibo:subsequentLegalDecision
    bibo:subsequentLegalDecision
    
    bibo:affirmedBy
    
    bibo:reversedBy
- alternate
- expressionType
- shortName
- mismatchRatePerBasePercentage
- matingType
- location
- numberOfSplicesGC_AG
- codeRepository
- tScore
- sequenceVersion
- parent
- thmmType
- letter
- cMax
- bindingProtein
- bibo:shortTitle
- chimeraRatio
- rbsSpacer
- dc:rights
- attribute
- PCRConditions
- metadata
- FSevalue
- devStage
- mapLocation
- startType
- genotypeName
- rbsMotif
- residue
- rdfs:subClassOf
- secondaryAccession
- tissueLib
- pForwardId
- rptType
- isBestOverlap
- mappingSpeedMillionOfReadsPerHour
- profileLength
- mismatchCount
- cloneLib
- markIfMoreThen1
- citation
- coverage
- TDcevalue
- orcid
- bibo:identifier
  bibo:identifier
  - bibo:isbn
    bibo:isbn
    
    bibo:isbn10
    
    bibo:isbn13
  - bibo:asin
  - bibo:oclcnum
  - bibo:gtin14
  - bibo:coden
  - bibo:lccn
  - bibo:pmid
  - bibo:uri
  - bibo:eissn
  - bibo:doi
  - bibo:upc
  - bibo:issn
  - bibo:handle
  - bibo:eanucc13
  - bibo:sici
- exonList
- translTable
- dbSNP
- mismatchLevelCount
- rBarcodeLength
- baseQuality
- yMax
- clusteredReadCount
- releaseDate
- maxChemeraDistR
- maxChemeraDistF
- fBarcodeFile
- translExcept
- units
- name
- geographicalCoordinate
- cScore
- bibo:argued
- adapter
- alignmentLength
- sourceMaterial
- description
- phredLikelihood
- barcodeHitsAccepted
- mapFile
- ncRNAClass
- bibo:prefixName
- transcript
- institutionCode
- modificationFunction
- foaf:depiction
- barcodeHitsAcceptedRatio
- traitName
- retrievedOn
- TDdomainNumber
- wasAssociatedWith
- strandBias
- bibo:number
- freq
- dc:dateAccepted

Table of contents

Subclasses
Annotations

TranscriptomeShotgunAssemblyEntry a skos:Concept, EntryType

Subclasses

Annotations


ddbjLabel	TSA
rdfs:label	Transcriptome Shotgun Assembly

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