UnsureBases a owl:Class extends AssemblyAnnotation
Subclasses
Annotations
| rdfs:comment | a small region of sequenced bases, generally 10 or fewer in its length, which could not be confidently identified. Such a region might contain called bases(A, T, G, or C), or a mixture of called-bases and uncalled-bases ('N').The unsure feature should not be used when annotating gaps in genome assemblies.Please refer to assembly_gap feature for gaps within the sequence of an assembled genome. For annotation of gaps in other sequences than assembled genomes use the gap feature. Note as observed in GCA_000018045 the unsure region can be larger |
| rdfs:comment | use /replace="" to annotate deletion, e.g. unsure 11..15 /replace="" |
| ddbjLabel | unsure |
| subDomain | SequenceFeatureCore |
| skos:definition | A small region of sequenced bases, which could not be confidently identified. |
| skos:exactMatch | http://purl.obolibrary.org/obo/SO_0001086 |
Properties
| property | description | cardinality | type |
|---|---|---|---|
| location | 1:1 | Location | |
| citation | Any publication associated to feature annotation | 0:N | Citation |
| expression | Expression feature | 0:N | Expression |
| function | Short description of the function | 0:1 | xsd:string |
| phenotype | Associated phenotypic property | 0:1 | xsd:string |
| provenance | The provenance of the feature | 1:N | FeatureProvenance |
| mapLocation | The map location on the chromosome from which the sample was obtained. | 0:1 | xsd:string |
| artificialLocation | Indicate that the location is artificial because of a heterogeneous population for low quality sequence region | 0:1 | ReasonArtificialLocation |
| accession | The accession id of the entry referenced | 0:N | xsd:string |
| standardName | The standard name of the feature | 0:1 | xsd:string |
| xref | Reference to other entries holding entries with related information in other databases | 0:N | XRef |
| note | A set off some additional notes | 0:N | Note |