| replace |
|
0:1 |
xsd:string |
| function |
Short description of the function |
0:1 |
xsd:string |
| homozygousSamples |
Number of Homozygous variant samples |
0:1 |
xsd:Integer |
| validated |
Validated |
0:1 |
xsd:string |
| end |
The begin position comes always first then the the end position. So for a gene on the reverse complementary strain the begin position is equal to the stop position. We use the same positioning definition as in GenBank and Faldo. |
0:1 |
Position |
| readDepth |
Read depth |
0:1 |
xsd:string |
| numberOfSamples |
Number of samples with data |
0:1 |
xsd:Integer |
| mapQuality |
Mapping Quality |
0:1 |
xsd:string |
| alleleFreq |
Frequency in which the alternate allele is found |
0:1 |
xsd:string |
| referenceAllele |
Allele of the reference sequence |
0:1 |
xsd:string |
| mapLocation |
The map location on the chromosome from which the sample was obtained. |
0:1 |
xsd:string |
| quality |
Quality score of the marker |
0:1 |
xsd:string |
| accession |
The accession id of the entry referenced |
0:N |
xsd:string |
| numberNotCalled |
Number of samples not called |
0:1 |
xsd:Integer |
| provenance |
The provenance of the feature |
1:N |
FeatureProvenance |
| heterozygousSamples |
Number of Heterozygous variant samples |
0:1 |
xsd:Integer |
| alternate |
Allele of the alternate sequence |
0:N |
xsd:string |
| CIGAR |
Cigar string describing alignment of alternate allele to reference |
0:1 |
xsd:string |
| standardName |
The standard name of the feature |
0:1 |
xsd:string |
| location |
|
1:1 |
Location |
| citation |
Any publication associated to feature annotation |
0:N |
Citation |
| expression |
Expression feature |
0:N |
Expression |
| genotype |
Genotypes of the sample the variant was called on |
0:N |
VariantGenotype |
| ancestralAllele |
Ancestral Allele |
0:1 |
xsd:string |
| artificialLocation |
Indicate that the location is artificial because of a heterogeneous population for low quality sequence region |
0:1 |
ReasonArtificialLocation |
| alleleNumber |
total number of alleles in called genotypes |
0:1 |
xsd:Integer |
| xref |
Reference to other entries holding entries with related information in other databases |
0:N |
XRef |
| alleleCount |
Alelle Count |
0:1 |
xsd:Integer |
| phenotype |
Associated phenotypic property |
0:1 |
xsd:string |
| varType |
The type of Variation |
1:1 |
VariationTypes |
| strandBias |
Strand bias |
0:1 |
xsd:string |
| dbSNP |
dbSNP membership |
0:1 |
xsd:string |
| ID |
Variant identification code |
0:1 |
xsd:string |
| filter |
filter |
0:1 |
xsd:string |
| note |
A set off some additional notes |
0:N |
Note |
| wildtypeSamples |
Number of wildtype samples |
0:1 |
xsd:Integer |
| baseQuality |
RMS base quality |
0:1 |
xsd:string |