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AssemblyGap a owl:Class extends AssemblyAnnotation

Subclasses

KnownLengthAssemblyGap

UnknownLengthAssemblyGap

Annotations

skos:definition A gap within the sequence
rdfs:comment The gap must be denoted with a series of N's in the sequence, if the assembly gap is of unknown length then number of N must be equal to the estimated length. If that is unknown it default to 100 and so should be denoted with 100 N's in the sequence. No upper or lower limit is set on the size of the gap.
empusa:propertyDefinitions # The linkage evidence use to link the sequences on both sides
linkageEvidence type::LinkageEvidence?;
#
The type of the gap
gapType type::GapType;
empusa:virtual true^^http://www.w3.org/2001/XMLSchema#boolean
subDomain SequenceFeatureCore
skos:exactMatch http://purl.obolibrary.org/obo/SO_0000730

Properties

property description cardinality type
linkageEvidence The linkage evidence use to link the sequences on both sides 0:1 LinkageEvidence
gapType The type of the gap 1:1 GapType