AssemblyGap a owl:Class extends AssemblyAnnotation

Subclasses


rdfs:comment	The gap must be denoted with a series of N's in the sequence, if the assembly gap is of unknown length then number of N must be equal to the estimated length. If that is unknown it default to 100 and so should be denoted with 100 N's in the sequence. No upper or lower limit is set on the size of the gap.
gen:virtual	true
subDomain	SequenceFeatureCore
skos:definition	A gap within the sequence
skos:exactMatch	http://purl.obolibrary.org/obo/SO_0000730

property	description	cardinality	type
location		1:1	Location
citation	Any publication associated to feature annotation	0:N	Citation
expression	Expression feature	0:N	Expression
function	Short description of the function	0:1	xsd:string
linkageEvidence	The linkage evidence use to link the sequences on both sides	0:1	LinkageEvidence
mapLocation	The map location on the chromosome from which the sample was obtained.	0:1	xsd:string
artificialLocation	Indicate that the location is artificial because of a heterogeneous population for low quality sequence region	0:1	ReasonArtificialLocation
accession	The accession id of the entry referenced	0:N	xsd:string
gapType	The type of the gap	1:1	GapType
xref	Reference to other entries holding entries with related information in other databases	0:N	XRef
phenotype	Associated phenotypic property	0:1	xsd:string
provenance	The provenance of the feature	1:N	FeatureProvenance
standardName	The standard name of the feature	0:1	xsd:string
note	A set off some additional notes	0:N	Note