| expectedAlleleCounts |
Expected allele counts(comma separated) |
0:1 |
xsd:String |
| genotype |
Genotype of a sample for a specific variant |
0:1 |
xsd:String |
| strain |
Strain VariantionGenotype was called on |
0:1 |
xsd:String |
| altOrganism |
Alternative Organism |
0:1 |
Organism |
| altDepth |
Read depth of alternate base |
0:1 |
xsd:String |
| phredLikelihood |
phred scaled likelihood |
0:1 |
xsd:Integer |
| readDepth |
Raw read depth |
0:1 |
xsd:String |
| mapQuality |
Mapping Quality |
0:1 |
xsd:Integer |
| depthQuality |
Read depth quality |
0:1 |
xsd:String |
| likelihood |
Genotype likelihoods comprised of comma separated floating point log10-scaled likelihoods for all possible genotypes given the set of alleles defined in the REF and ALT fields |
0:1 |
xsd:String |
| genotypeQuality |
Genotype quality |
0:1 |
xsd:String |
| refDepth |
Read depth of reference base |
0:1 |
xsd:String |
| haploQuality |
Haplotype qualities |
0:1 |
xsd:String |
| phaseSet |
Phase set |
0:1 |
xsd:String |
| pVal |
p-value from Fisher's Exact Test |
0:1 |
xsd:String |
| phaseQuality |
Phase quality |
0:1 |
xsd:Integer |
| filter |
genotype filter |
0:1 |
xsd:String |
| phredProb |
phred probabilities |
0:1 |
xsd:Float |
| freq |
Allele frequency |
0:1 |
xsd:String |
| realGenotype |
Actual Genotype of a sample for a specific variant |
0:1 |
xsd:String |
| refOrganism |
Reference Organism |
0:1 |
Organism |