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CDS a owl:Class extends TranscriptFeature

Subclasses

Annotations

skos:definition Coding sequence; sequence of nucleotides that corresponds with the sequence of amino acids in a protein (location includes stop codon); feature includes amino acid conceptual translation.
ddbjLabel CDS
subDomain SequenceFeatureCore
skos:editorialNote TransLExcept class added to ontology, only CDS has this property

/codon_start has valid value of 1 or 2 or 3, indicating the offset at which the first complete codon of a coding feature can be found, relative to the first base of that feature; /transl_table defines the genetic code table used if other than the universal genetic code table; genetic code exceptions outside the range of the specified tables is reported in /transl_except qualifier; /protein_id consists of a stable ID portion (3+5 format with 3 position letters and 5 numbers) plus a version number after the decimal point; when the protein sequence encoded by the CDS changes, only the version number of the /protein_id value is incremented; the stable part of the /protein_id remains unchanged and as a result will permanently be associated with a given protein;
skos:exactMatch http://purl.obolibrary.org/obo/SO_0000316
http://www.wikidata.org/entity/Q3780824

Properties

property description cardinality type
proteinId The ID of the protein if translated from this CDS (format ^\s([A-Z]{3}\d{5})(\.)(\d+)\s$) 0:1 xsd:String
ribosomalSlippage Indicate the presence of ribosomal slippage, the slippage region are excluded from the CDS using a CollectionOfRegions location for the CDS on the transcript. 0:1 xsd:Boolean
exception Deprecated feature, which is imported from GenBank, mark a unconventional translation of the transcript 0:1 xsd:String
product Short description of the product resulting from the feature 0:1 xsd:String
codonStart If the start position is unknown, indicate with this property, where the first complete codon can be found 0:1 xsd:Integer
protein The resulting product protein when translating this CDS, each protein should have an IRI equal to http://gbol.life/0.1/protein/. 1:1 Protein
translExcept Indicate all codons, which have translation other then the default translation of the translation table 0:N TranslExcept