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NASequence a owl:Class extends Sequence

Subclasses

CompleteNASequence

Transcript

UncompleteNASequence

Annotations

rdfs:comment Physical nucleotide sequence can be a DNA or RNA molecule being either single or double stranded.
rdfs:comment Represents a physical nucleotide sequence
subDomain SequenceFeatureCore

Properties

property description cardinality type
topology The topology of the sequence (linear, circular) 0:1 Topology
clone If a clone library was used for sequencing, the sequence can originate from one or more clones 0:N xsd:String
expression Expression feature 0:N Expression
rearranged Indicates if the sequence has undergone somatic rearrangement as part of an adaptive immune response. If equal to false it is the un-rearranged sequence that was inherited from the parental germ line. If equal to true the sequence has undergone somatic rearrangement as part of an adaptive immune response. If not defined it is not applicable to the sequence or unknown. 0:1 xsd:Boolean
translTable The translation table of the nucleotide sequence, if not present its inherited from the parent NASequence 0:1 xsd:Integer
macronuclear Indicates that this sequence from the macro-nuclear DNA from an organism which undergoes chromosomal differentiation between macro-nuclear and micro-nuclear stages. 0:1 xsd:Boolean
feature The set of features annotating the sequence 0:N NAFeature
integratedInto If this NA object is integrated into another NA object, for example a phage genome which is integrated into a bacterial genome or a plasmid which is integrated into a yeast genome. 0:1 NASequence
proviral Indicates that this sequence is obtained from a virus or phage that is integrated into the genome of another organism 0:1 xsd:Boolean
cloneLib If a clone library was used for sequencing, specify the clone library 0:1 xsd:String