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Sequence a owl:Class

Subclasses

Protein

NASequence

Annotations

skos:definition Represents a physical sequence
rdfs:comment Physical sequence can be a DNA, RNA or Protein molecule
empusa:framing :feature - :Exon
empusa:propertyDefinitions # The hash key of the sequence
sha384 xsd:String;
#
The sequence, encoded with the default DNA(including degenerated nucleotides), RNA(including degenerated nucleotides) or protein encoding. For any special items please use the modifiedBase and modifiedResidue features.
sequence xsd:String;
# The optional assembly information of the sequence
assembly @:SequenceAssembly?;
#
Length of the sequence
length xsd:long;
# The set of features annotating the sequence
feature @:Feature
;
# Sample from which the sequence is originating
sample @:Sample?;
#
The organism from which the sequence orginates from
organism @:Organism?;
# A short description of the sequence
description xsd:String?;
#
The common name of the sequence
commonName xsd:String?;
# The recommended name of the sequence
recommendedName xsd:String?;
#
The standard name of the feature
standardName xsd:String?;
# The short name of the sequence
shortName xsd:String?;
#
Accession identifier of a given sequence object
accession xsd:String;
#
Any alternative names of the sequence
alternativeNames xsd:String;
#
Short description of the function
function xsd:String?;
# A link to a specific citation
citation @:Citation
;
# The version of the sequence
sequenceVersion xsd:PositiveInteger?;
#
Reference to entries in other databases which also represent the same sequence. Note that the GBOLDocment xref and sequence xref can point to same GenBank/EBML entry.
xref @:XRef;
#
A extra note on the sequence itself, do not add notes related to the GBOLDocument or sample.
note @:Note*;
empusa:virtual true^^http://www.w3.org/2001/XMLSchema#boolean
subDomain SequenceFeatureCore

Properties

property description cardinality type
citation A link to a specific citation 0:N Citation
sample Sample from which the sequence is originating 0:1 Sample
function Short description of the function 0:1 xsd:String
description A short description of the sequence 0:1 xsd:String
accession Accession identifier of a given sequence object 0:N xsd:String
sequenceVersion The version of the sequence 0:1 xsd:Integer
sequence The sequence, encoded with the default DNA(including degenerated nucleotides), RNA(including degenerated nucleotides) or protein encoding. For any special items please use the modifiedBase and modifiedResidue features. 1:1 xsd:String
xref Reference to entries in other databases which also represent the same sequence. Note that the GBOLDocment xref and sequence xref can point to same GenBank/EBML entry. 0:N XRef
length Length of the sequence 1:1 xsd:Long
alternativeNames Any alternative names of the sequence 0:N xsd:String
feature The set of features annotating the sequence 0:N Feature
organism The organism from which the sequence orginates from 0:1 Organism
recommendedName The recommended name of the sequence 0:1 xsd:String
commonName The common name of the sequence 0:1 xsd:String
sha384 The hash key of the sequence 1:1 xsd:String
standardName The standard name of the feature 0:1 xsd:String
shortName The short name of the sequence 0:1 xsd:String
note A extra note on the sequence itself, do not add notes related to the GBOLDocument or sample. 0:N Note
assembly The optional assembly information of the sequence 0:1 SequenceAssembly